Pitera, Jed: search on Z-Library

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1

Design technology co-optimization assessment for directed self-assembly-based lithography: design for directed self-assembly or directed self-assembly for design?

Lai, Kafai, Liu, Chi-Chun, Tsai, Hsinyu, Xu, Yongan, Chi, Cheng, Raghunathan, Ananthan, Dhagat, Parul, Hu, Lin, Park, Oseo, Jung, Sunggon, Cho, Wooyong, Morillo, Jaime, Pitera, Jed, Schmidt, Kristin,

Journal:

Journal of Micro/Nanolithography MEMS and MOEMS

Year:

2017

Language:

english

File:

PDF, 10.49 MB

english, 2017

2

Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew

Horn, Hans W., Swope, William C., Pitera, Jed W., Madura, Jeffry D., Dick, Thomas J., Hura, Greg L., Head-Gordon, Teresa

Journal:

The Journal of Chemical Physics

Year:

2004

Language:

english

File:

PDF, 1.17 MB

english, 2004

3

Broad-Spectrum Antimicrobial Supramolecular Assemblies with Distinctive Size and Shape

Fukushima, Kazuki, Tan, Jeremy P. K., Korevaar, Peter A., Yang, Yi Yan, Pitera, Jed, Nelson, Alshakim, Maune, Hareem, Coady, Daniel J., Frommer, Jane E., Engler, Amanda C., Huang, Yuan, Xu, Kaijin, Ji

Journal:

Year:

2012

Language:

english

File:

PDF, 1.50 MB

english, 2012

4

Extremely precise free energy calculations of amino acid side chain analogs: Comparison of common molecular mechanics force fields for proteins

Shirts, Michael R., Pitera, Jed W., Swope, William C., Pande, Vijay S.

Journal:

The Journal of Chemical Physics

Year:

2003

Language:

english

File:

PDF, 781 KB

english, 2003

5

Use of the Weighted Histogram Analysis Method for the Analysis of Simulated and Parallel Tempering Simulations

Chodera, John D., Swope, William C., Pitera, Jed W., Seok, Chaok, Dill, Ken A.

Journal:

Journal of Chemical Theory and Computation

Year:

2007

Language:

english

File:

PDF, 165 KB

english, 2007

6

Biochemical Characterization and Crystallographic Structure of an Escherichia coli Protein from the Phosphotriesterase Gene Family †

Buchbinder, Jenny L., Stephenson, Robert C., Dresser, Mark J., Pitera, Jed W., Scanlan, Thomas S., Fletterick, Robert J.

Journal:

Year:

1998

Language:

english

File:

PDF, 263 KB

english, 1998

7

Interfacial Fluctuations of Block Copolymers: A Coarse-Grain Molecular Dynamics Simulation Study

Srinivas, Goundla, Swope, William C., Pitera, Jed W.

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 713 KB

english, 2007

8

Understanding Substrate Specificity in Human and Parasite Phosphoribosyltransferases through Calculation and Experiment †

Pitera, Jed W., Munagala, Narsimha R., Wang, Ching C., Kollman, Peter A.

Journal:

Year:

1999

Language:

english

File:

PDF, 190 KB

english, 1999

9

Directed Self-Assembly of Lamellar Microdomains of Block Copolymers Using Topographic Guiding Patterns

Park, Sang-Min, Rettner, Charles T., Pitera, Jed W., Kim, Ho-Cheol

Journal:

Year:

2009

Language:

english

File:

PDF, 2.88 MB

english, 2009

10

Determination of the Internal Morphology of Nanostructures Patterned by Directed Self Assembly

Sunday, Daniel F., Hammond, Matthew R., Wang, Chengqing, Wu, Wen-li, Delongchamp, Dean M., Tjio, Melia, Cheng, Joy Y., Pitera, Jed W., Kline, R. Joseph

Journal:

Year:

2014

Language:

english

File:

PDF, 4.21 MB

english, 2014

11

Absence of reptation in the high-temperature folding of the trpzip2 β-hairpin peptide

Pitera, Jed W., Haque, Imran, Swope, William C.

Journal:

The Journal of Chemical Physics

Year:

2006

Language:

english

File:

PDF, 395 KB

english, 2006

12

Observation of Noncooperative Folding Thermodynamics in Simulations of 1BBL

Pitera, Jed W., Swope, William C., Abraham, Farid F.

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 901 KB

english, 2008

13

Graphical visualization of mean hydration from molecular dynamics simulations

Jed Pitera, Peter Kollman

Journal:

Journal of Molecular Graphics and Modelling

Year:

1997

Language:

english

File:

PDF, 59 KB

english, 1997

14

Self-assembly in casting solutions of block copolymer membranes

Marques, Debora Salomon, Vainio, Ulla, Chaparro, Nicolas Moreno, Calo, Victor Manuel, Bezahd, Ali Reza, Pitera, Jed W., Peinemann, Klaus-Viktor, Nunes, Suzana P.

Journal:

Year:

2013

Language:

english

File:

PDF, 973 KB

english, 2013

15

SPIE Proceedings [SPIE SPIE Advanced Lithography - San Jose, California, USA (Sunday 24 February 2008)] Emerging Lithographic Technologies XII - Rapid directed self-assembly of Lamellar microdomains from a block copolymer containing hybrid

Kim, Ho-Cheol, Schellenberg, Frank M., Cheng, Joy, Park, Oun-Ho, Park, Sang-Min, Ruiz, Ricardo, Black, Charles T., Pitera, Jed, Rettner, Charles, Flickner, Myron

Year:

2008

Language:

english

File:

PDF, 1.95 MB

english, 2008

16

A Comparison of Non-Bonded Scaling Approaches for Free Energy Calculations

Pitera, Jed W., van Gunsteren, Wilfred F.

Journal:

Molecular Simulation

Year:

2002

Language:

english

File:

PDF, 261 KB

english, 2002

17

Long‐Time Protein Folding Dynamics from Short‐Time Molecular Dynamics Simulations

Chodera, John D., Swope, William C., Pitera, Jed W., Dill, Ken A.

Journal:

Multiscale Modeling and Simulation

Year:

2006

Language:

english

File:

PDF, 677 KB

english, 2006

18

Simulations of the Estrogen Receptor Ligand-Binding Domain: Affinity of Natural Ligands and Xenoestrogens

Oostenbrink, B. Chris, Pitera, Jed W., van Lipzig, Marola M. H., Meerman, John H. N., van Gunsteren, Wilfred F.

Journal:

Journal of Medicinal Chemistry

Year:

2000

Language:

english

File:

PDF, 205 KB

english, 2000

19

Soft Patchy Nanoparticles from Solution-Phase Self-Assembly of Binary Diblock Copolymers

Srinivas, Goundla, Pitera, Jed W.

Journal:

Year:

2008

Language:

english

File:

PDF, 984 KB

english, 2008

20

Designing an Optimum Guest for a Host Using Multimolecule Free Energy Calculations: Predicting the Best Ligand for Rebek's “Tennis Ball”

Pitera, Jed, Kollman, Peter

Journal:

Journal of the American Chemical Society

Year:

1998

Language:

english

File:

PDF, 129 KB

english, 1998

21

Fundamental study of extreme UV resist line edge roughness: Characterization, experiment, and modeling

Ayothi, Ramakrishnan, Singh, Lovejeet, Hishiro, Yoshi, Pitera, Jed W., Sundberg, Linda K., Sanchez, Martha I., Bozano, Luisa, Virwani, Kumar, Truong, Hoa D., Arellano, Noel, Petrillo, Karen, Wallraff,

Journal:

Journal of Vacuum Science & Technology B Microelectronics and Nanometer Structures

Year:

2012

Language:

english

File:

PDF, 4.39 MB

english, 2012

22

Biochemical Characterization and Crystallographic Structure of an Escherichia coli Protein from the Phosphotriesterase Gene Family

Buchbinder, Jenny L., Stephenson, Robert C., Dresser, Mark J., Pitera, Jed W., Scanlan, Thomas S., Fletterick, Robert J.

Journal:

Year:

1998

File:

PDF, 5 KB

1998

23

Pattern Placement Accuracy in Block Copolymer Directed Self-Assembly Based on Chemical Epitaxy

Doerk, Gregory S., Liu, Chi-Chun, Cheng, Joy Y., Rettner, Charles T., Pitera, Jed W., Krupp, Leslie E., Topuria, Teya, Arellano, Noel, Sanders, Daniel P.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.06 MB

english, 2013

24

[ACM Press the 46th Annual Design Automation Conference - San Francisco, California (2009.07.26-2009.07.31)] Proceedings of the 46th Annual Design Automation Conference on ZZZ - DAC '09 - Oil fields, hedge funds, and drugs

Groeneveld, Patrick, Rutenbar, Rob A., Pitera, Jed, Carlson, Erik, Chen, Jinsong

Year:

2009

Language:

english

File:

PDF, 61 KB

english, 2009

25

Multi-Label Patent Categorization with Non-Local Attention-Based Graph Convolutional Network

Tang, Pingjie, Jiang, Meng, Xia, Bryan (Ning), Pitera, Jed W., Welser, Jeffrey, Chawla, Nitesh V.

Journal:

Proceedings of the AAAI Conference on Artificial Intelligence

Year:

2020

File:

PDF, 1.84 MB

2020

26

Exhaustive mutagenesis in silico: Multicoordinate free energy calculations on proteins and peptides

Jed W. Pitera, Peter A. Kollman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 241 KB

english, 2000

27

Heterogeneous Folding of the trpzip Hairpin: Full Atom Simulation and Experiment

Wei Yuan Yang, Jed W. Pitera, William C. Swope, Martin Gruebele

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.55 MB

english, 2004

28

[IEEE 2017 IEEE International Conference on Data Science and Advanced Analytics (DSAA) - Tokyo, Japan (2017.10.19-2017.10.21)] 2017 IEEE International Conference on Data Science and Advanced Analytics (DSAA) - Materials Science Literature-Patent Relevance Search: A Heterogeneous Network Analysis Approach

Tang, Pingjie, Pitera, Jed, Zubarev, Dmitry, Chawla, Nitesh V.

Year:

2017

Language:

english

File:

PDF, 850 KB

english, 2017

29

Characterization of the TIP4P-Ew water model: Vapor pressure and boiling point

Horn, Hans W., Swope, William C., Pitera, Jed W.

Journal:

The Journal of Chemical Physics

Year:

2005

Language:

english

File:

PDF, 643 KB

english, 2005

30

Directed Self-assembly on Sparse Chemical Patterns for Lithographic Applications

Cheng, Joy Y., Nelson, Alshaki, Rettner, Charles T., Sanders, Daniel P., Sutherland, Alexander, Pitera, Jed W., Na, Young-Hye, Kim, Ho-Cheol, Hinsberg, William

Journal:

Journal of Photopolymer Science and Technology

Year:

2009

Language:

english

File:

PDF, 520 KB

english, 2009

31

Essential Step toward Mining Big Polymer Data: PolyName2Structure, Mapping Polymer Names to Structures

Lin, Chieh, Wang, Pei-Hua, Hsiao, Yi, Chan, Yi-Tsu, Engler, Amanda C, Pitera, Jed W., Sanders, Daniel P., Cheng, Joy, Tseng, Yufeng Jane

Journal:

ACS Applied Polymer Materials

Year:

2020

File:

PDF, 820 KB

2020

32

The Importance of Solute−Solvent van der Waals Interactions with Interior Atoms of Biopolymers

Pitera, Jed W., van Gunsteren, Wilfred F.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 32 KB

english, 2001

33

Dielectric Properties of Proteins from Simulation: The Effects of Solvent, Ligands, pH, and Temperature

Pitera, Jed W., Falta, Michael, van Gunsteren, Wilfred F.

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 534 KB

english, 2001

34

Supramolecular high-aspect ratio assemblies with strong antifungal activity

Fukushima, Kazuki, Liu, Shaoqiong, Wu, Hong, Engler, Amanda C., Coady, Daniel J., Maune, Hareem, Pitera, Jed, Nelson, Alshakim, Wiradharma, Nikken, Venkataraman, Shrinivas, Huang, Yuan, Fan, Weimin, Y

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 5.33 MB

english, 2013

35

Simulations of the Estrogen Receptor Ligand-Binding Domain: Affinity of Natural Ligands and Xenoestrogens.

Oostenbrink, B. Chris, Pitera, Jed W., van Lipzig, Marola M. H., Meerman, John H. N., van Gunsteren, Wilfred F.

Journal:

Journal of Medicinal Chemistry

Year:

2001

File:

PDF, 13 KB

2001

36

[IEEE 2014 IEEE International Electron Devices Meeting (IEDM) - San Francisco, CA, USA (2014.12.15-2014.12.17)] 2014 IEEE International Electron Devices Meeting - Electrical characterization of FinFETs with fins formed by directed self assembly at 29 nm fin pitch using a self-aligned fin customization scheme

Tsai, Hsinyu, Miyazoe, Hiroyuki, Chang, Josephine B., Pitera, Jed, Liu, Chi-Chun, Brink, Markus, Lauer, Isaac, Cheng, Joy Y., Engelmann, Sebastian, Rozen, John, Bucchignano, James J., Klaus, David P.,

Year:

2014

Language:

english

File:

PDF, 1.51 MB

english, 2014

37

SPIE Proceedings [SPIE SPIE Advanced Lithography - San Jose, California (Sunday 12 February 2012)] Alternative Lithographic Technologies IV - Progress towards the integration of optical proximity correction and directed self-assembly of block copolymers with graphoepitaxy

Liu, Chi-Chun, Pitera, Jed, Lafferty, Neal, Lai, Kafai, Rettner, Charles, Tjio, Melia, Arellano, Noel, Cheng, Joy, Tong, William M.

Year:

2012

Language:

english

File:

PDF, 1.50 MB

english, 2012

38

Orientation Control of Block Copolymers using Surface Active, Phase-preferential Additives

Vora, Ankit, Schmidt, Kristin, Alva, Gabriela, Arellano, Noel, Magbitang, Teddie P, Chunder, Anindarupa, Thompson, Leslie, Lofano, Elizabeth, Pitera, Jed W., Cheng, Joy Y, Sanders, Daniel P.

Journal:

ACS Applied Materials & Interfaces

Year:

2016

Language:

english

File:

PDF, 3.56 MB

english, 2016

39

Programmable Nanoparticle Ensembles via High-Throughput Directed Self-Assembly

Dai, Qiu, Chen, Yingyu, Liu, Chi-Chun, Rettner, Charles T., Holmdahl, Bryan, Gleixner, Stacy, Chung, Richard, Pitera, Jed W., Cheng, Joy, Nelson, Alshakim

Journal:

Year:

2013

Language:

english

File:

PDF, 511 KB

english, 2013

40

Expected Distributions of Root-Mean-Square Positional Deviations in Proteins

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 597 KB

english, 2014

41

Kinetic Computational Alanine Scanning: Application to p53 Oligomerization

Lillian T. Chong, William C. Swope, Jed W. Pitera, Vijay S. Pande

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 589 KB

english, 2006

42

One-Step Perturbation Methods for Solvation Free Energies of Polar Solutes

Pitera, Jed W., van Gunsteren, Wilfred F.

Journal:

Journal of Physical Chemistry B

Year:

2001

Language:

english

File:

PDF, 139 KB

english, 2001

43

On the Use of Experimental Observations to Bias Simulated Ensembles

Pitera, Jed W., Chodera, John D.

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 952 KB

english, 2012

44

Rapid directed self assembly of lamellar microdomains from a block copolymer containing hybrid

Cheng, Joy Y., Pitera, Jed, Park, Oun-Ho, Flickner, Myron, Ruiz, Ricardo, Black, Charles T., Kim, Ho-Cheol

Journal:

Applied Physics Letters

Year:

2007

Language:

english

File:

PDF, 648 KB

english, 2007

45

Comparison of computational approaches for predicting the effects of missense mutations on p53 function

Lillian T. Chong, Jed W. Pitera, William C. Swope, Vijay S. Pande

Journal:

Journal of Molecular Graphics and Modelling

Year:

2009

Language:

english

File:

PDF, 248 KB

english, 2009

46

SPIE Proceedings [SPIE SPIE Advanced Lithography - San Jose, California (Sunday 12 February 2012)] Alternative Lithographic Technologies IV - Measurement of placement error between self-assembled polymer patterns and guiding chemical prepatterns

Doerk, Gregory S., Liu, Chi-Chun, Cheng, Joy Y., Rettner, Charles T., Pitera, Jed W., Krupp, Leslie, Topuria, Teya, Arellano, Noel, Sanders, Daniel P., Tong, William M.

Year:

2012

Language:

english

File:

PDF, 265 KB

english, 2012

47

Correlation of early orientational ordering of engineered λ6–85 structure with kinetics and thermodynamics

Edgar Larios, Jed W. Pitera, William C. Swope, Martin Gruebele

Journal:

Chemical Physics

Year:

2006

Language:

english

File:

PDF, 471 KB

english, 2006

48

SPIE Proceedings [SPIE SPIE Advanced Lithography - San Jose, California, USA (Sunday 23 February 2014)] Optical Microlithography XXVII - Computational lithography platform for 193i-guided directed self-assembly

Lai, Kafai, Erdmann, Andreas, Lai, Kafai, Ozlem, Melih, Pitera, Jed W., Liu, Chi-chun, Schepis, Anthony, Dechene, Daniel, Krasnoperova, Azalia, Brue, Daniel, Abdallah, Jassem, Tsai, Hsinyu, Guillorn,

Year:

2014

Language:

english

File:

PDF, 2.86 MB

english, 2014

49

Assessing the effect of conformational averaging on the measured values of observables

Roland Bürgi, Jed Pitera, Wilfred F. van Gunsteren

Journal:

Journal of Biomolecular NMR

Year:

2001

Language:

english

File:

PDF, 394 KB

english, 2001

50

Prediction of the Binding Free Energies of New TIBO-like HIV-1 Reverse Transcriptase Inhibitors Using a Combination of PROFEC, PB/SA, CMC/MD, and Free Energy Calculations

Eriksson, Mats A. L., Pitera, Jed, Kollman, Peter A.

Journal:

Journal of Medicinal Chemistry

Year:

1999

Language:

english

File:

PDF, 300 KB

english, 1999

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